PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g080780.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 401aa    MW: 45582.2 Da    PI: 6.513
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g080780.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093273641954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  L++++gL+++qV++WF N R +
  Sopim04g080780.0.1 327 FEHflHPYPNDSEKLMLSSQTGLSKNQVSNWFINARVR 364
                         554458******************************88 PP

2BELL97.79.6e-32189260172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         er+el  k+ kL+ lleeV++rY+qy++ ++ v s Fe++ag g+ k Yt+lAl+a+SrhF cL+d i++qi
  Sopim04g080780.0.1 189 ERHELYVKIMKLIALLEEVERRYEQYYQHMEEVTSTFEVIAGFGAGKAYTALALQAMSRHFCCLRDSIISQI 260
                         799********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-27120258IPR006563POX domain
PfamPF075261.1E-37126256IPR006563POX domain
SMARTSM003893.9E-8308372IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-26313374IPR009057Homeodomain-like
CDDcd000861.07E-9314369No hitNo description
SuperFamilySSF466891.37E-16315375IPR009057Homeodomain-like
PfamPF059207.2E-17325364IPR008422Homeobox KN domain
PROSITE profilePS5007111.499327368IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTSQIGSQHF DMYQSDTTTA YQPHGGLSRS IEFVNHPDFT TDSHDVNHSR HLMDLLGASH  60
DANTNQQAQR LSLSLGSHSL VSTFTNNPSY MNQEIDQRNN EFSFSAAAMN QSFSNVCGTE  120
SFVSAIGNSK YLKPTQSLLE ELVCIGGKTI DSSNEKFIRR LSRNSKKGSL SLRAMLKGEI  180
PPNNELFNER HELYVKIMKL IALLEEVERR YEQYYQHMEE VTSTFEVIAG FGAGKAYTAL  240
ALQAMSRHFC CLRDSIISQI NFIRQKMPRD VPKISSGLSH LSLFEKETLQ NRISLQQLGI  300
IQSNRQAWQP IRGLPETSVA FLRSWLFEHF LHPYPNDSEK LMLSSQTGLS KNQVSNWFIN  360
ARVRLWKPMI EEMYKEEFAE SSVESDNLLN REAVTDSAEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_B4e-15314372563Homeobox protein Meis2
3k2a_A4e-15314372563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238268.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD16e-98BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLK4BVF70.0K4BVF7_SOLLC; Uncharacterized protein
STRINGSolyc04g080780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-92BEL1-like homeodomain 11